Installation

There are two ways to install CNApy:

1. Under any operating system, by installing CNApy as a conda package (see https://github.com/cnapy-org/CNApy#install-cnapy-with-conda)
2. As an alternative installation way under Windows, by using the .exe installer attached to CNApy’s latest release.

Documentation

CNApy guide

Video tutorials

• Create a new CNApy project
• Perform FBA and FVA with CNApy
• Calculate Elementary Modes with CNApy
• Calculate Minimal Cut Sets with CNApy

How to run a script in the CNApy terminal

import testscript
testscript.run(cna)

Setup the CNApy development environment with conda

We use conda as package manager to install all dependencies. You can use miniconda. If you have conda installed you can:

conda env create -n cnapy -f environment.yml

Activate the cnapy conda environment

conda activate cnapy

Checkout the latest cnapy development version using git

git clone https://github.com/cnapy-org/CNApy.git

Change into the source directory and install CNApy

cd CNApy

Run CNApy

python cnapy.py

Contributing

How to make a contribution to CNApy?

Any contribution intentionally submitted for inclusion in the work by you, shall be licensed under the terms of the Apache 2.0 license without any additional terms or conditions.